UPDATE to glass installation.
After working on this again, I have determined or figured out it is a whole lot easier to get the glass in the door if you do not have the vent window and front glass run installed first.

So, after fiddling with the assembly process, I would suggest THIS:

Starting with bare door, slide the window glass in from the wide slot at the rear of the door, then position the glass in the bottom of the door WITHOUT the rubber stop in the bottom center.

Next, slide the rear track into position and bolt it loosely into place.  Note:  Leave the door handle rods off until after you do rear track.  You cannot get the flanges of that track past the rods.  Install door handle and rods AFTER the track is in place.

NOW, slide the front vent window frame vertically into position, being careful to get the glass in the channel as you go.  Be sure you have several layers of masking tape on the painted edges of the door. 

While it is possible to get the glass in the door with the vent window in place, I have found t eliminates alot of fighting with the glass if you just put it in there first.

Once the vent window frame is bolted loosely into place, the top adjuster can be used to tilt the vent window frame in/out to get proper fit.  On my car, there is virtually no front-back adjustment of the vent frame.  It fits where it fits and cannot be moved.  Be sure the lower horizontal edge of the vent window frame is parallel to the top of the door ior it will look obviously OFF.
The lower window track adjustment should be left loose until everything else is adjusted.  All it does is make sure the track has the proper curvature to fit the glass.

This may be different than I have done it before, and it is probably different than how an expert might do it, but I believe in figuring things out for myself and doing them how they work best for me.  So, here it is!

Almost forgot...  The fuzzies.  remember I said to leave the rubber stop at the glass bottom out?  That is so the glass goes down far enough for the fuzzies to be snapped in place.  If yours are like mine, when they were removed from the doors, the slots get chewed up in the door.  Be sure to take some flat pliers BEFORE you insert the glass, and flatten all of them out real neat so the fuzzies can fit flat and snap into place cleanly.  If they are not straightened and cleaned up, the clips might not catch and it looks terrible with a loose fuzzy!

Once the fuzzies and the regulators (or power window motors) are installed, then you can put the rubber stops in the bottom of the door.  I used a little grease on mine to help get them to go in that slot.

First things last...  Be sure to put masking tape - several layers, on all the sharp edges of the door access holes where you will be sticking your arms in there to do stuff.  It will sure lessen the scratches and cuts all over your arms.  Do this first, not half way through the job as I did.

Hope this helps someone!

MS wrote:

UPDATE to glass installation.
After working on this again, I have determined or figured out it is a whole lot easier to get the glass in the door if you do not have the vent window and front glass run installed first.

So, after fiddling with the assembly process, I would suggest THIS:

Starting with bare door, slide the window glass in from the wide slot at the rear of the door, then position the glass in the bottom of the door WITHOUT the rubber stop in the bottom center.

Next, slide the rear track into position and bolt it loosely into place.  Note:  Leave the door handle rods off until after you do rear track.  You cannot get the flanges of that track past the rods.  Install door handle and rods AFTER the track is in place.

NOW, slide the front vent window frame vertically into position, being careful to get the glass in the channel as you go.  Be sure you have several layers of masking tape on the painted edges of the door. 

While it is possible to get the glass in the door with the vent window in place, I have found t eliminates alot of fighting with the glass if you just put it in there first.

Once the vent window frame is bolted loosely into place, the top adjuster can be used to tilt the vent window frame in/out to get proper fit.  On my car, there is virtually no front-back adjustment of the vent frame.  It fits where it fits and cannot be moved.  Be sure the lower horizontal edge of the vent window frame is parallel to the top of the door ior it will look obviously OFF.
The lower window track adjustment should be left loose until everything else is adjusted.  All it does is make sure the track has the proper curvature to fit the glass.

This may be different than I have done it before, and it is probably different than how an expert might do it, but I believe in figuring things out for myself and doing them how they work best for me.  So, here it is!

Almost forgot...  The fuzzies.  remember I said to leave the rubber stop at the glass bottom out?  That is so the glass goes down far enough for the fuzzies to be snapped in place.  If yours are like mine, when they were removed from the doors, the slots get chewed up in the door.  Be sure to take some flat pliers BEFORE you insert the glass, and flatten all of them out real neat so the fuzzies can fit flat and snap into place cleanly.  If they are not straightened and cleaned up, the clips might not catch and it looks terrible with a loose fuzzy!

Once the fuzzies and the regulators (or power window motors) are installed, then you can put the rubber stops in the bottom of the door.  I used a little grease on mine to help get them to go in that slot.

First things last...  Be sure to put masking tape - several layers, on all the sharp edges of the door access holes where you will be sticking your arms in there to do stuff.  It will sure lessen the scratches and cuts all over your arms.  Do this first, not half way through the job as I did.

Hope this helps someone!

Thanks for this write up. I'm going to be doing this in the next week or two once my vent windows arrive, so this is very helpful.

One question, though. Above you said you were starting with a door. Do you mean truly bare, like no regulators installed yet either?

If so, at what point do you install the regulators? 

Thanks!